PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA09G15400.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family SBP
Protein Properties Length: 400aa    MW: 41634.1 Da    PI: 8.5722
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA09G15400.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP119.21.9e-3773156177
                      --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTS.......SEEETTT--SS--S-STTTT-------S-- CS
              SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCs.......rfhelsefDeekrsCrrrLakhnerrrkkq 77 
                      +CqvegC +dls +k y+ rhkvC +h+k p v+v+gleqrfCqqCs       rfh+l efD+ek+sCrrrLa+hnerrrk++
  ONIVA09G15400.1  73 RCQVEGCGVDLSGVKPYYCRHKVCYMHAKEPIVVVAGLEQRFCQQCSrcsvhmvRFHQLPEFDQEKKSCRRRLAGHNERRRKPT 156
                      6*********************************************955555555***************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.105.6E-3070142IPR004333Transcription factor, SBP-box
PROSITE profilePS5114128.66771155IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.89E-3672158IPR004333Transcription factor, SBP-box
PfamPF031101.5E-2774154IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048653Biological Processanther development
GO:2000025Biological Processregulation of leaf formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MATGGSGGGG GGGGGGDDVH GLKFGKKIYF EQDAAASASA AAVESSSTSS GGGGKKGKGV  60
AAAAAPPPPP PPRCQVEGCG VDLSGVKPYY CRHKVCYMHA KEPIVVVAGL EQRFCQQCSR  120
CSVHMVRFHQ LPEFDQEKKS CRRRLAGHNE RRRKPTPGPL SSRYGRLAAS FHEEPGRSRS  180
FVVDFSYPRV PSSVRDAWPA IQPSDRMSGS IQWQGGHELH PHRSAVAGYS DHHAFSSHGG  240
SAAGAPMLHH PAFELTSGGC LAGVATDSSC ALSLLSTQPW DTTQSTSSHN RSPPMSSTAS  300
AFGGGNNPVS PSVMASNYMA ASPGWNSSSR GHDGARNVHL PPPHGVVLNE VPPGSVHHGH  360
FSGELELALQ GGAPSNRPEA EHGSGSGAFS HSTNAMNWSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-26741541184squamosa promoter binding protein-like 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00307DAPTransfer from AT2G42200Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0635610.0AK063561.1 Oryza sativa Japonica Group cDNA clone:001-117-F03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015610961.10.0PREDICTED: squamosa promoter-binding-like protein 17 isoform X1
SwissprotA3C0570.0SPL17_ORYSJ; Squamosa promoter-binding-like protein 17
TrEMBLA0A0E0ILK70.0A0A0E0ILK7_ORYNI; Uncharacterized protein
STRINGLOC_Os09g31438.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25273787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.11e-41squamosa promoter binding protein-like 9